Okay, I'm digging into your issue, and I understand what's wrong. Molly's chaos route shouldn't be available on her love path. When given the chance to trigger the chaos path (at the bar, a few updates ago), the choice should have been locked away. That's why the game forcefully put you on the "bad" ending from love path. Was it always like that, or did you notice a sudden switch between Molly's love and corruption? (I'm so dead inside, that kind of mistake is my worst nightmare
)
PS : you found every chaos path available, that's impressive!
PS2 : I can forcefully put you back on corruption path, so you can keep playing right away if you want.
PS3 (damn, that's a lot of edit) : double checked the code, it works as intended. I guess the most logical solution is that I made that mistake in the past, realized it and change the code accordingly, but your save was already made. Did you restart the game from scratch after the rebuild, or did you continue where you were?